TEMPLATE Pharmacogenetic test result (Pharmacogenetic test result)

TEMPLATE IDPharmacogenetic test result
ConceptPharmacogenetic test result
DescriptionNot Specified
PurposeNot Specified
References
Authorsdate: 2023-04-21
Other Details Languagedate: 2023-04-21
OtherDetails Language Independent{licence=This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/4.0/., custodian_organisation=openEHR Foundation, PARENT:MD5-CAM-1.0.1=D02DE57ACD4A04C1ADAE1F8B28197890, original_language=ISO_639-1::en, original_namespace=org.openehr, original_publisher=openEHR Foundation, custodian_namespace=org.openehr, MD5-CAM-1.0.1=1e3bea3a50e73205ba0d6be71921b41c, sem_ver=1.0.0-alpha.2}
Language useden
Citeable Identifier1013.26.891
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It is strongly recommended that 'Test name' be coded with a terminology, for example LOINC or SNOMED CT. For example: 'Glucose', 'Urea and Electrolytes', 'Swab', 'Cortisol (am)', 'Potassium in perspiration' or 'Melanoma histopathology'. 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For example: 'Serum sodium', 'Haemoglobin'. Coding with an external terminology is strongly recommended, such as LOINC, NPU, SNOMED CT, or local lab terminologies., uncommonOntologyItems={fhir_mapping=Observation.code, hl7v2_mapping=OBX.3}, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-OBSERVATION.laboratory_test_result.v1]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.laboratory_test_analyte.v1]/items[openEHR-EHR-CLUSTER.pharmacogenetic_result.v0], code=at0000, itemType=CLUSTER, level=5, text=Pharmacogenetic result, description=Findings on pharmacogenetic testing for a single gene., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-OBSERVATION.laboratory_test_result.v1]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.laboratory_test_analyte.v1]/items[openEHR-EHR-CLUSTER.pharmacogenetic_result.v0]/items[at0003], code=at0003, itemType=ELEMENT, level=6, text=Gene symbol, description=The official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name., comment=Coding with an external terminology is preferred, where possible. Preferably this should be coded with terms from the HGNC (HUGO Gene Nomenclature Committee) nomenclature, using 'http://www.genenames.org' as the terminology identifier. 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It is possible to add other coded text values when they are required., uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=
  •  Coded Text
    • Normal metaboliser 
    • Rapid metaboliser 
    • Ultrarapid metaboliser 
    • Intermediate metaboliser 
    • Poor metaboliser 
    • Increased function 
    • Decreased function 
    • Normal function 
    • Poor function 
    • Negative 
    • Positive 
    • Normal risk of aminoglycoside-induced hearing loss 
    • Increased risk of aminoglycoside-induced hearing loss 
    • Uncertain risk of aminoglycoside-induced hearing loss 
  •  Text
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itemType=CLUSTER, level=6, text=Variant detail, description=Findings and annotations related to one variant found in a human individual by a sequencing test., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-OBSERVATION.laboratory_test_result.v1]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.laboratory_test_analyte.v1]/items[openEHR-EHR-CLUSTER.pharmacogenetic_result.v0]/items[openEHR-EHR-CLUSTER.genomic_variant_result.v1]/items[openEHR-EHR-CLUSTER.media_file.v1], code=at0000, itemType=CLUSTER, level=7, text=VRS attachment, description=A media file that is acquired or used as part of the healthcare process, and associated metadata., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, 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For example: RTF or PDF for a document; JPG for an image; MP4 for a video; or WAV for an audio file. If the file is stored at a location outside of the health record, the detailed path to the file is captured using the URI attribute in the Multimedia data type. The Multimedia data type has many RM attributes such as the size of file and URI to an external source - see https://specifications.openehr.org/releases/RM/latest/data_types.html#_dv_multimedia_class., uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_MULTIMEDIA, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-OBSERVATION.laboratory_test_result.v1]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.laboratory_test_analyte.v1]/items[openEHR-EHR-CLUSTER.pharmacogenetic_result.v0]/items[openEHR-EHR-CLUSTER.genomic_variant_result.v1]/items[openEHR-EHR-CLUSTER.media_file.v1]/items[at0002], code=at0002, itemType=ELEMENT, level=8, text=Content name, description=Descriptive name or title for the media file., comment=A description of the content of the media file. Use an agreed standardised naming convention, if available. For example: "Right hand burn #1" or "Cardiology video consultation on May 2"., uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=Default value: G4AGH VRS file, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-OBSERVATION.laboratory_test_result.v1]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.laboratory_test_analyte.v1]/items[openEHR-EHR-CLUSTER.pharmacogenetic_result.v0]/items[openEHR-EHR-CLUSTER.genomic_variant_result.v1]/items[openEHR-EHR-CLUSTER.media_file.v1]/items[at0004], code=at0004, itemType=ELEMENT, level=8, text=Created, description=The date/time, partial date or period when the media file was generated or authored., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=
  •  Date/Time
  •  Interval of Date/Time
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