PK ͘:M meta.xmljHeather LeslieXMindR3.7.7.201801311814675827#F3F4F9PKa PK ͘:M content.xml @@Laboratory test resultDataTest nameSLOT: Specimen detailTest statusTest status timestampDiagnostic service categoryClinical information providedSLOT: Test findingsConclusionTest diagnosisSLOT: Multimedia representationCommentProtocolReceiving laboratoryLaboratory test identifierTest request details Original test requested nameRequester order identifierReceiver order identifierRequesterDistribution listPoint of care deviceSLOT: Test method/device detailsExtensionStateConfounding factorsSLOT: Confounding factors detailsGenetic test result (Portugal)DataDescription of genetic testDescription of genetic testTextOptionalDescription the genetic test performed.Sample detailSample detailClusterOptional, repeatingTo record details of a laboratory specimen.Include:openEHR-EHR-CLUSTER.specimen.v0 and specialisationsTest resultTest resultCoded TextOptionalGenetic test result.at0028::Normal[Normal test - not pathogenic variant was observed. ]at0029::Abnormal test[Pathogenic variant was observed. ]at0030::Failed test[Failed test (e.g missing sample, wrong collection, wrong storage, etc)]Genetic scopeGenetic scopeTextOptionalGenetic scope - according to HGNC symbols and names. site (http://www.genenames.org/Genetic sequenceGenetic sequence fileGenetic sequence fileMultimediaOptionalGenetic sequence (e.g: file, upload of images)Genetic sequence locationGenetic sequence locationURIOptionalGenetic sequence location (e.g site).Genetic sequenceClusterOptional(Cardinality: 1..*, unordered)Genetic sequence.Clinical information providedClinical information providedTextOptionalDescription of clinical information available at the time of interpretation of results, which may include a link to the original clinical information provided in the test request. In HL7 fhir this information is held within the linked requestDetail.clinical Notes. fhir_mapping: DiagnosticReport.requestDetail.ClinicalNotesCommentCommentTextOptionalSpecific comments about the genetic test result.Confounding factorsConfounding factorsTextOptionalRecord any issues or factors that may impact on the measurement of genetic test result, e.g: fed/fasting status; medications, sample storage, etc.Patient state detailsPatient state detailsClusterOptional, repeatingDetails of patient state that may alter interpretation of the laboratory.Include:All not explicitly excluded archetypesProtocolResponsible laboratoryResponsible laboratoryClusterOptional, repeatingDemographic details of the laboratory with responsability for the test.Include:All not explicitly excluded archetypesLaboratory test identifierLaboratory test identifierIdentifierOptionalThe local identifier given to the laboratory test result by the laboratory information system.Test device detailsTest device detailsClusterOptional, repeatingAdditional structured details of laboratory test methodology followed (e.g: cytogenetic, biochemica, etc). For example, structured details about the laboratory method and data interpretation used.Include:openEHR-EHR-CLUSTER.device_details.v1 and specialisations (1)Test request detailsOriginal test requested sequenceOriginal test requested sequenceTextOptionalIdentification of the original laboratory test requested, where the test requested difers from the test actually performed.RequesterRequesterClusterOptional, repeatingDetails of the clinician or organisation requesting the laboratoy test result.Include:All not explicitly excluded archetypesRequester order identifierRequester order identifierIdentifierOptionalThe local ID assigned to the test order by the order requester. (Equivalent to the HL7 placer order identifier).Receiver order identifierReceiver order identifierIdentifierOptionalThe local ID assignd to the test order by the order filler, usually by the Laboratoy Information System (LIS).Assigning an identifier to a requeste by the Laboratory Information System (LIS) enables tracking progress of the request and enables linking results to requests,. It also provides a reference to assist with enquiries and it is usuall equivalent to the HL7 Filler Order Identifier.Distribution listDistribution listClusterOptional, repeatingDetails of a clinician or organisation who will receive a copy of the laboratory test results.Include:All not explicitly excluded archetypesExclude:openEHR-EHR-CLUSTER.distribution.v1 and specialisationsTest request detailsClusterOptional(Cardinality: 1..*, unordered)Details concerning genetic test requested.Laboratory scopeLaboratory scopeCoded TextOptionalWhere the genetic test was performed.at0104::Diagnostic laboratory[Diagnostic laboratory]at0105::Research laboratory[Research laboratory]ExtensionExtensionClusterOptional, repeatingSlot to allow extension to support localisation or alugnment with ther standards/reference models.Include:All not explicitly excluded archetypesGenetic test result (Italy)DataTest performedIndication for testReasonable for a request but ?? useful in resultsSLOT: Specimen detailTest statusTest status timestampDiagnostic service categoryClinical information providedSLOT:Genetic findingsPrimary findingsInterpretation summaryRecommendationsSLOT: Multimedia representationCommentProtocolReceiving laboratoryLaboratory test identifierTest request details Original test requested nameRequester order identifierReceiver order identifierRequesterDistribution listPoint of care deviceAnalytic wet bench processSequencing methodReagentsTest method/device detailsBioinformatic analysisWorkflow IDURLVersion DescriptionReferencesLimitationsExtensionStateConfounding factorsSLOT: Confounding factors detailsSequence variationGene symbol-1OBSERVATIONsGenetic findingsFinding[Sequence variation]Sequence variationGenomic location[Reference sequence]Reference sequenceSource nameAccession numberVersion numberURLGenome assemblyGenomic regionStart positionContigGeneGene symbolFull nameVariation descriptionVariation identifierSource nameIdentificationVersionURLAlternateVariant type[Variant]Indel variantStart positionEnd positionDeleted nucleotide(s)Inserted nucleotide(s)Duplication variantStart positionEnd positionDuplicated nucletide(s)Repeated sequence variantStart position