| ARCHETYPE ID | openEHR-EHR-CLUSTER.lab_molecular_microbial.v0 |
|---|---|
| Concept | Molecular microbial test findings |
| Description | The result of a laboratory test for the detection and identification of specific micro-organism DNA or RNA in a specimen, using nucleic acid probes. |
| Use | Use to record the qualitative and quantitative findings for a specific microbial molecular genetic test. |
| Misuse | Not to be used to record findings observed from microbial culture of a specimen - use the CLUSTER.laboratory_test_culture archetype for this purpose. Not to be used to record findings from antigen or antibody testing of a specimen - use the CLUSTER.laboratory_test_antibody or CLUSTER.laboratory_test_antigen archetypes for this purpose. |
| Purpose | To record the qualitative and quantitative findings for a specific microbial molecular genetic test. |
| References | https://www.rcpa.edu.au/Manuals/RCPA-Manual/Pathology-Tests/M/Molecular-genetics-microbial |
| Copyright | © openEHR Foundation, Ministry of Health and Wellness Jamaica |
| Authors | Author name: Heather Leslie Organisation: Atomica Informatics Email: heather.leslie@atomicainformatics.com Date originally authored: 2024-08-09 |
| Other Details Language | Author name: Heather Leslie Organisation: Atomica Informatics Email: heather.leslie@atomicainformatics.com Date originally authored: 2024-08-09 |
| Other Details (Language Independent) |
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| Keywords | nucleic,probe,DNA,RNA,microbial,molecular,genetic,gene |
| Lifecycle | in_development |
| UID | 8db141b8-785f-4a55-966c-f959507b6a59 |
| Language used | en |
| Citeable Identifier | 1013.1.7650 |
| Revision Number | 0.0.1-alpha |
| items | |
| Test name | Test name: Name of the molecular test carried out. Coding with an external terminology is recommended, if available. For example: PCR for Mycobacterium tuberculosis or SARS-CoV-2. |
| Microbial target | Microbial target: The name of the microorganism being detected. Coding with an external terminology is recommended, if available. For example: SARS-CoV-2, Mycobacterium tuberculosis, or Candida albicans. |
| Molecular target | Molecular target: The specific genetic material within the microorganism that is being detected. Coding with an external terminology is recommended, if available. For example: 16S rRNA gene (for bacteria), RdRp gene (for SARS-CoV-2), or ITS region (for fungi). |
| Test method | Test method: Method used for the molecular test. For example: PCR, RT-PCR, NGS, isothermal amplification. |
| Specimen | Specimen: Identification of the specimen examined. If the tissue specimen has previously been identified in a a higher level archetype level archetype, such as the OBSERVATION.laboratory_test_result, this SLOT may be redundant. Include: All not explicitly excluded archetypes |
| Presence | Presence: Statement about detection of the identified microorganism in the specimen.
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| Quantitative result | Quantitative result: Quantitative assessment of the amount of the identified microorganism in the specimen. Property: Concentration Units: copies/mL |
| Comment | Comment: Additional narrative about the test finding not captured in other fields. |
| Other contributors | Nicola Ewen, SERHA/Ministry of Health and Wellness, Jamaica Heather Leslie, Atomica Informatics, Australia (openEHR Editor) Yohann White, Ministry of Health and Wellness, Jamaica |
| Translators |