All | Archetype [runtimeNameConstraintForConceptName=null, archetypeConceptBinding=null, archetypeConceptDescription=Findings observed from culturing a specimen to detect and identify the growth of microorganisms., archetypeConceptComment=null, otherContributors=Nicola Ewen, SERHA/Ministry of Health and Wellness, Jamaica Heather Leslie, Atomica Informatics, Australia (openEHR Editor) Yohann White, Ministry of Health and Wellness, Jamaica, originalLanguage=en, translators=, subjectOfData=unconstrained, archetypeTranslationTree=null, topLevelToAshis={state=[], contacts=[], details=[], description=[], content=[], provider=[], data=[], identities=[], other_participations=[], activities=[], protocol=[], credentials=[], events=[], context=[], relationships=[], target=[], capabilities=[], items=[ResourceSimplifiedHierarchyItem [path=/items[at0018], code=at0018, itemType=ELEMENT, level=1, text=Overall growth, description=Statement about the presence or absence of any microbial growth on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=- at0019::Growth
- at0020::No growth
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0001], code=at0001, itemType=ELEMENT, level=1, text=Findings, description=Narrative description of the findings on microbiological culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002], code=at0002, itemType=CLUSTER, level=1, text=Per microorganism, description=Details about specific culture findings for each identified organism., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText= (Cardinality: 1..*, unordered), subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0003], code=at0003, itemType=ELEMENT, level=2, text=Microorganism name, description=Name of the microorganism cultured., comment=For example: name of a bacteria, virus or fungus., uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0021], code=at0021, itemType=ELEMENT, level=2, text=Growth, description=Observation about the presence or absence of growth of the identified organism on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=- at0022::Detected
- at0023::Not detected
- at0024::Indeterminate
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0004], code=at0004, itemType=ELEMENT, level=2, text=Qualitative result, description=Qualitative assessment of the amount of the identified microorganism grown on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
- Text
- Coded Text
- at0005::No growth
- at0006::Light growth
- at0007::Moderate growth
- at0008::Heavy growth
- Scale
0.0: at0030::- 1.0: at0031::+ 2.0: at0032::++ 3.0: at0033::+++
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0025], code=at0025, itemType=ELEMENT, level=2, text=Quantitative result, description=Quantitative assessment of the amount of the identified microorganism grown on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=C_DV_QUANTITY, bindings=null, values=Units: - {cfu}/mL
- {cfu}/g
- {cells}/mL
- %
- {pfu}/mL
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009], code=at0009, itemType=CLUSTER, level=2, text=Susceptibility test, description=Details about the ability of the microorganism to grow in the presence of an antimicrobial agent., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText= (Cardinality: 1..*, unordered), subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009]/items[at0010], code=at0010, itemType=ELEMENT, level=3, text=Antimicrobial agent, description=The name of the antimicrobial substance being tested., comment=For example: the name of an antibiotic, antiviral or antifungal., uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009]/items[at0011], code=at0011, itemType=ELEMENT, level=3, text=Minimum inhibitory concentration (MIC), description=The lowest concentration of an antimicrobial agent required to inhibit visible growth., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=C_DV_QUANTITY, bindings=null, values=Units: , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009]/items[at0012], code=at0012, itemType=ELEMENT, level=3, text=Interpretation, description=Interpretation of the MIC value as a category., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=- at0013::Sensitive (S)
- at0014::Intermediate (I)
- at0015::Resistant (R)
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0016], code=at0016, itemType=ELEMENT, level=2, text=Comment, description=Additional narrative about the culture findings for the identified microorganism, not captured in other fields., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0017], code=at0017, itemType=ELEMENT, level=1, text=Overall comment, description=Additional narrative about the overall culture findings, not captured in other fields., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null]], source=[], ism_transition=[]}, topLevelItems={items=ResourceSimplifiedHierarchyItem [path=ROOT_/, code=at0000, itemType=CLUSTER, level=0, text=null, description=null, comment=null, uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=1..*, cardinalityText= (Cardinality: 1..*, unordered), subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=null, extendedValues=null]}, addHierarchyItemsTo=items, currentHierarchyItemsForAdding=[ResourceSimplifiedHierarchyItem [path=/items[at0018], code=at0018, itemType=ELEMENT, level=1, text=Overall growth, description=Statement about the presence or absence of any microbial growth on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=- at0019::Growth
- at0020::No growth
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0001], code=at0001, itemType=ELEMENT, level=1, text=Findings, description=Narrative description of the findings on microbiological culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002], code=at0002, itemType=CLUSTER, level=1, text=Per microorganism, description=Details about specific culture findings for each identified organism., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText= (Cardinality: 1..*, unordered), subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0003], code=at0003, itemType=ELEMENT, level=2, text=Microorganism name, description=Name of the microorganism cultured., comment=For example: name of a bacteria, virus or fungus., uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0021], code=at0021, itemType=ELEMENT, level=2, text=Growth, description=Observation about the presence or absence of growth of the identified organism on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=- at0022::Detected
- at0023::Not detected
- at0024::Indeterminate
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0004], code=at0004, itemType=ELEMENT, level=2, text=Qualitative result, description=Qualitative assessment of the amount of the identified microorganism grown on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
- Text
- Coded Text
- at0005::No growth
- at0006::Light growth
- at0007::Moderate growth
- at0008::Heavy growth
- Scale
0.0: at0030::- 1.0: at0031::+ 2.0: at0032::++ 3.0: at0033::+++
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0025], code=at0025, itemType=ELEMENT, level=2, text=Quantitative result, description=Quantitative assessment of the amount of the identified microorganism grown on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=C_DV_QUANTITY, bindings=null, values=Units: - {cfu}/mL
- {cfu}/g
- {cells}/mL
- %
- {pfu}/mL
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009], code=at0009, itemType=CLUSTER, level=2, text=Susceptibility test, description=Details about the ability of the microorganism to grow in the presence of an antimicrobial agent., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText= (Cardinality: 1..*, unordered), subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009]/items[at0010], code=at0010, itemType=ELEMENT, level=3, text=Antimicrobial agent, description=The name of the antimicrobial substance being tested., comment=For example: the name of an antibiotic, antiviral or antifungal., uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009]/items[at0011], code=at0011, itemType=ELEMENT, level=3, text=Minimum inhibitory concentration (MIC), description=The lowest concentration of an antimicrobial agent required to inhibit visible growth., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=C_DV_QUANTITY, bindings=null, values=Units: , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009]/items[at0012], code=at0012, itemType=ELEMENT, level=3, text=Interpretation, description=Interpretation of the MIC value as a category., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=- at0013::Sensitive (S)
- at0014::Intermediate (I)
- at0015::Resistant (R)
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0016], code=at0016, itemType=ELEMENT, level=2, text=Comment, description=Additional narrative about the culture findings for the identified microorganism, not captured in other fields., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0017], code=at0017, itemType=ELEMENT, level=1, text=Overall comment, description=Additional narrative about the overall culture findings, not captured in other fields., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null]], minIndents={}, termBindingRetrievalErrorMessage=null] |