ARCHETYPE Microbiology culture findings (openEHR-EHR-CLUSTER.lab_microscopy_culture.v0)

ARCHETYPE IDopenEHR-EHR-CLUSTER.lab_microscopy_culture.v0
ConceptMicrobiology culture findings
DescriptionFindings observed from culturing a specimen to detect and identify the growth of microorganisms.
UseUse to record findings observed from culturing a specimen to detect and identify microorganisms, including bacteria, viruses and fungi.
PurposeTo record findings observed from culturing a specimen to detect and identify microorganisms.
References
Copyright© openEHR Foundation, Ministry of Health and Wellness Jamaica
AuthorsAuthor name: Heather Leslie
Organisation: Atomica Informatics
Email: heather.leslie@atomicainformatics.com
Date originally authored: 2024-08-09
Other Details LanguageAuthor name: Heather Leslie
Organisation: Atomica Informatics
Email: heather.leslie@atomicainformatics.com
Date originally authored: 2024-08-09
OtherDetails Language Independent{licence=This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/4.0/., custodian_organisation=openEHR Foundation, original_namespace=org.openehr, original_publisher=openEHR Foundation, custodian_namespace=org.openehr, MD5-CAM-1.0.1=2587477720E092BABE88278936596802, build_uid=597b1cb9-3323-467c-af08-eb0175cc21e1, revision=0.0.1-alpha}
Keywords
Lifecyclein_development
UID7415727a-362b-41ad-8c6b-a1c294b31148
Language useden
Citeable Identifier1013.1.7645
Revision Number0.0.1-alpha
AllArchetype [runtimeNameConstraintForConceptName=null, archetypeConceptBinding=null, archetypeConceptDescription=Findings observed from culturing a specimen to detect and identify the growth of microorganisms., archetypeConceptComment=null, otherContributors=Nicola Ewen, SERHA/Ministry of Health and Wellness, Jamaica
Heather Leslie, Atomica Informatics, Australia (openEHR Editor)
Yohann White, Ministry of Health and Wellness, Jamaica, originalLanguage=en, translators=, subjectOfData=unconstrained, archetypeTranslationTree=null, topLevelToAshis={state=[], contacts=[], details=[], description=[], content=[], provider=[], data=[], identities=[], other_participations=[], activities=[], protocol=[], credentials=[], events=[], context=[], relationships=[], target=[], capabilities=[], items=[ResourceSimplifiedHierarchyItem [path=/items[at0018], code=at0018, itemType=ELEMENT, level=1, text=Overall growth, description=Statement about the presence or absence of any microbial growth on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=
  • Growth
  • No growth
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0001], code=at0001, itemType=ELEMENT, level=1, text=Findings, description=Narrative description of the findings on microbiological culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002], code=at0002, itemType=CLUSTER, level=1, text=Per microorganism, description=Details about specific culture findings for each identified organism., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText=, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0003], code=at0003, itemType=ELEMENT, level=2, text=Microorganism name, description=Name of the microorganism cultured., comment=For example: name of a bacteria, virus or fungus., uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0021], code=at0021, itemType=ELEMENT, level=2, text=Growth, description=Observation about the presence or absence of growth of the identified organism on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=
  • Detected
  • Not detected
  • Indeterminate
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0004], code=at0004, itemType=ELEMENT, level=2, text=Qualitative result, description=Qualitative assessment of the amount of the identified microorganism grown on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
  •  Text
  •  Coded Text
    • No growth
    • Light growth
    • Moderate growth
    • Heavy growth
  •  Scale
    0.0: -
    1.0: +
    2.0: ++
    3.0: +++
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0025], code=at0025, itemType=ELEMENT, level=2, text=Quantitative result, description=Quantitative assessment of the amount of the identified microorganism grown on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=C_DV_QUANTITY, bindings=null, values=Units:
  • {cfu}/mL
  • {cfu}/g
  • {cells}/mL
  • %
  • {pfu}/mL
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009], code=at0009, itemType=CLUSTER, level=2, text=Susceptibility test, description=Details about the ability of the microorganism to grow in the presence of an antimicrobial agent., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText=, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009]/items[at0010], code=at0010, itemType=ELEMENT, level=3, text=Antimicrobial agent, description=The name of the antimicrobial substance being tested., comment=For example: the name of an antibiotic, antiviral or antifungal., uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009]/items[at0011], code=at0011, itemType=ELEMENT, level=3, text=Minimum inhibitory concentration (MIC), description=The lowest concentration of an antimicrobial agent required to inhibit visible growth., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=C_DV_QUANTITY, bindings=null, values=Units:
  • mg/L
  • ug/mL
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009]/items[at0012], code=at0012, itemType=ELEMENT, level=3, text=Interpretation, description=Interpretation of the MIC value as a category., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=
  • Sensitive (S)
  • Intermediate (I)
  • Resistant (R)
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0016], code=at0016, itemType=ELEMENT, level=2, text=Comment, description=Additional narrative about the culture findings for the identified microorganism, not captured in other fields., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0017], code=at0017, itemType=ELEMENT, level=1, text=Overall comment, description=Additional narrative about the overall culture findings, not captured in other fields., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null]], source=[], ism_transition=[]}, topLevelItems={items=ResourceSimplifiedHierarchyItem [path=ROOT_/, code=at0000, itemType=CLUSTER, level=0, text=null, description=null, comment=null, uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=1..*, cardinalityText=, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=null, extendedValues=null]}, addHierarchyItemsTo=items, currentHierarchyItemsForAdding=[ResourceSimplifiedHierarchyItem [path=/items[at0018], code=at0018, itemType=ELEMENT, level=1, text=Overall growth, description=Statement about the presence or absence of any microbial growth on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=
  • Growth
  • No growth
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0001], code=at0001, itemType=ELEMENT, level=1, text=Findings, description=Narrative description of the findings on microbiological culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002], code=at0002, itemType=CLUSTER, level=1, text=Per microorganism, description=Details about specific culture findings for each identified organism., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText=, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0003], code=at0003, itemType=ELEMENT, level=2, text=Microorganism name, description=Name of the microorganism cultured., comment=For example: name of a bacteria, virus or fungus., uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0021], code=at0021, itemType=ELEMENT, level=2, text=Growth, description=Observation about the presence or absence of growth of the identified organism on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=
  • Detected
  • Not detected
  • Indeterminate
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0004], code=at0004, itemType=ELEMENT, level=2, text=Qualitative result, description=Qualitative assessment of the amount of the identified microorganism grown on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
  •  Text
  •  Coded Text
    • No growth
    • Light growth
    • Moderate growth
    • Heavy growth
  •  Scale
    0.0: -
    1.0: +
    2.0: ++
    3.0: +++
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0025], code=at0025, itemType=ELEMENT, level=2, text=Quantitative result, description=Quantitative assessment of the amount of the identified microorganism grown on culture., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=C_DV_QUANTITY, bindings=null, values=Units:
  • {cfu}/mL
  • {cfu}/g
  • {cells}/mL
  • %
  • {pfu}/mL
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009], code=at0009, itemType=CLUSTER, level=2, text=Susceptibility test, description=Details about the ability of the microorganism to grow in the presence of an antimicrobial agent., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText=, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009]/items[at0010], code=at0010, itemType=ELEMENT, level=3, text=Antimicrobial agent, description=The name of the antimicrobial substance being tested., comment=For example: the name of an antibiotic, antiviral or antifungal., uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009]/items[at0011], code=at0011, itemType=ELEMENT, level=3, text=Minimum inhibitory concentration (MIC), description=The lowest concentration of an antimicrobial agent required to inhibit visible growth., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=C_DV_QUANTITY, bindings=null, values=Units:
  • mg/L
  • ug/mL
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0009]/items[at0012], code=at0012, itemType=ELEMENT, level=3, text=Interpretation, description=Interpretation of the MIC value as a category., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=
  • Sensitive (S)
  • Intermediate (I)
  • Resistant (R)
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002]/items[at0016], code=at0016, itemType=ELEMENT, level=2, text=Comment, description=Additional narrative about the culture findings for the identified microorganism, not captured in other fields., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0017], code=at0017, itemType=ELEMENT, level=1, text=Overall comment, description=Additional narrative about the overall culture findings, not captured in other fields., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null]], minIndents={}, termBindingRetrievalErrorMessage=null]