ARCHETYPE Biospecimen summary - semen (openEHR-EHR-EVALUATION.biospecimen_summary-semen.v0)

ARCHETYPE IDopenEHR-EHR-EVALUATION.biospecimen_summary-semen.v0
ConceptBiospecimen summary - semen
DescriptionSummary or persistent information about a sperm specimen.
UseUse to record summary or persistent record about about a sperm specimen. This archetype has been designed to track the collection, storage, management, use or disposition of a sperm specimen, especially in assisted reproduction treatment. Details about the biospecimen, including collection information, can be recorded using the CLUSTER.specimen in the 'Specimen details' SLOT. Details about the location of the biospecimen can be recorded using the CLUSTER.specimen_container and CLUSTER.biobank in the 'Storage details' SLOT.
PurposeTo record a summary or persistent record about a sperm specimen.
ReferencesAshford, P., et al., Standard terminology for reproductive tissue and cell products for use in ART. Human Reproduction Open, 2019. 2019(2): p. hoz005.
Copyright© openEHR Foundation
AuthorsAuthor name: Heather Leslie
Organisation: Atomica Informatics
Email: heather.leslie@atomicainformatics.com
Date originally authored: 2022-02-09
Other Details LanguageAuthor name: Heather Leslie
Organisation: Atomica Informatics
Email: heather.leslie@atomicainformatics.com
Date originally authored: 2022-02-09
Other Details (Language Independent)
  • Licence: This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/4.0/.
  • Custodian Organisation: openEHR Foundation
  • References: Ashford, P., et al., Standard terminology for reproductive tissue and cell products for use in ART. Human Reproduction Open, 2019. 2019(2): p. hoz005.
  • Original Namespace: org.openehr
  • Original Publisher: openEHR Foundation
  • Custodian Namespace: org.openehr
  • MD5-CAM-1.0.1: 9556A36CAAE30E281F1A3574B1A79D32
  • Build Uid: 2bc0abdb-9c31-4edc-9ddf-6ad2c8fc0e5d
  • Ip Acknowledgements: This artefact includes content from SNOMED Clinical Terms® (SNOMED CT®) which is copyrighted material of the International Health Terminology Standards Development Organisation (IHTSDO). Where an implementation of this artefact makes use of SNOMED CT content, the implementer must have the appropriate SNOMED CT Affiliate license - for more information contact https://www.snomed.org/snomed-ct/get-snomed or info@snomed.org.
  • Revision: 0.0.1
Keywordsassisted reproduction, testicular, testicle, tissue, semen, sperm
Lifecyclerejected
UID035d8e23-ab6f-40d7-9a46-3c9def35de43
Language useden
Citeable Identifier1013.1.6043
Revision Number0.0.1
data
Biospecimen IDBiospecimen ID: Unique identifier for the biospecimen.
For example: SEC-ID (The Single European Code) for tissues and cell products, used in, among other things, reproductive medicine treatment.
Choice of:
  •  Identifier
  •  Text
Biospecimen typeBiospecimen type: The type of cell or tissue collected.
CategoryCategory: The category of the biospecimen.
For example: Normal/Abnormal; or Tumoral/Peritumoral.
DescriptionDescription: Narrative description about the biospecimen.
For example, information about how it was collected.
TreatmentTreatment: Narrative description about the management of the biospecimen prior to preservation, including clinical treatments.
It is possible to link from this data element to an ACTION.procedure within the health record to record the specific details about the clinical procedure/s and timing.
Date of preservationDate of preservation: The date/time when the biospecimen was preserved.
Type of preservationType of preservation: The technique used to preserve the biospecimen.
Specimen detailsSpecimen details: Details about the biospecimen.
For example: date & time of collection, specific project number for the biospecimen collection.
Include:
openEHR-EHR-CLUSTER.specimen.v2 and specialisations or
openEHR-EHR-CLUSTER.specimen.v1 and specialisations
Date of storageDate of storage: The date/time when the biospecimen was stored.
Storage detailsStorage details: Details about the storage of the biospecimen.
For example: details about the container and biobank where the biospecimen is stored.
Include:
openEHR-EHR-CLUSTER.biobank_storage.v0 and specialisations or
openEHR-EHR-CLUSTER.biobank_storage.v1 and specialisations or
openEHR-EHR-CLUSTER.specimen_container.v0 and specialisations or
openEHR-EHR-CLUSTER.specimen_container.v1 and specialisations
DispositionDisposition: The final disposition of the biospecimen.
Usually this involves use, donation or disposal.
Date of dispositionDate of disposition: The date/time for the disposition of the biospecimen.
Expiry dateExpiry date: The date beyond the biospecimen is not to be used.
Additional detailsAdditional details: Additional structured details related to the biospecimen.
Include:
All not explicitly excluded archetypes
CommentComment: Additional narrative about the biospecimen, not captured in other fields.
Sperm procurementSperm procurement: The method used to collect or recover the sperm.
Choice of:
  •  Coded Text
    • Ejaculation [Sperm procured from ejaculate.]
    • Epididymal aspirate [Sperm procured by aspiration from epididymis.]
    • Testicular aspirate [Sperm procured by percutaneous aspiration from testis.]
    • Testicular biopsy [Sperm procured by biopsy of testis.]
    • Unknown [Procurement method is not specified, or not applicable.]
  •  Text
Sperm preparationSperm preparation: The treatment of the sperm.
Choice of:
  •  Coded Text
    • Unwashed [Raw ejaculate.]
    • Washed [The ejaculate has been washed by centrifugation in a buffer solution.]
    • Prepared [Viable sperm cells have been isolated from other contents of the seminal fluid.]
    • Unknown [No information about the preparation of sperm is provided, or not applicable.]
  •  Text
protocol
Last updatedLast updated: The date this biospecimen summary was last updated.
ExtensionExtension: Additional information required to extend the model with local content or to align with other reference models or formalisms.
For example: local information requirements; or additional metadata to align with FHIR.
Include:
All not explicitly excluded archetypes
Other contributorsVebjørn Arntzen, Oslo University Hospital, Norway (openEHR Editor)
Peter Fedorcsak, University of Oslo, Norway (openEHR Editor)
Liv Laugen, ​Oslo University Hospital, Norway, Norway (openEHR Editor)
Heather Leslie, Atomica Informatics, Australia (openEHR Editor)
Translators
  • German: Natalia Strauch, Medizinische Hochschule Hannover, Strauch.Natalia@mh-hannover.de
  • Norwegian Bokmål: Liv Laugen, ​Oslo University Hospital, Norway, liv.laugen@ous-hf.no