All | Archetype [runtimeNameConstraintForConceptName=null, archetypeConceptBinding=null, archetypeConceptDescription=Details about the contents of a container stored for the purposes of assisted reproduction treatment., archetypeConceptComment=null, otherContributors=Vebjørn Arntzen, Oslo University Hospital Liv Laugen, Oslo University Hospital Peter Fedorcsak, Oslo University Hospital, originalLanguage=en, translators=, subjectOfData=unconstrained, archetypeTranslationTree=null, topLevelToAshis={events=[], content=[], identities=[], description=[], relationships=[], target=[], ism_transition=[], data=[], protocol=[], source=[], capabilities=[], contacts=[], provider=[], details=[], items=[ResourceSimplifiedHierarchyItem [path=/items[at0001], code=at0001, itemType=ELEMENT, level=1, text=Product ID, description=The unique identifier for the reproductive cell or tissue product in the container., comment=This data element has multiple occurrences to allow for more than one oocyte or embryo, or other product per container. May be identical with applicable ID element in OBSERVATION.embryo_assessment or other related archetypes., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_IDENTIFIER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0026], code=at0026, itemType=ELEMENT, level=1, text=Product class, description=Class of cell or tissue product stored in the container., comment=Use of an established product classification is preferred, e.g. ISBT128 or EUTC., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0028::Sperm [The male gamete.]
- at0029::Testicular tissue [Fragment of testicular tissue.]
- at0030::Oocyte [The female gamete.]
- at0031::Ovarian tissue [Fragment of the ovary.]
- at0032::Zygote [A single cell resulting from fertilization of a mature oocyte by a spermatozoon and before completion of the first mitotic division.]
- at0033::Embryo [The biological organism resulting from the development of the zygote, until eight completed weeks after fertilization, equivalent to 10 weeks of gestational age.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0034], code=at0034, itemType=ELEMENT, level=1, text=Oocyte maturation stage, description=The stage of maturation of the oocyte., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0038::Not specified [No information about the oocyte maturation stage is provided or not applicable.]
- at0039::Immature [An oocyte at prophase of meiosis I (i.e. an oocyte at the germinal vesicle (GV) stage).]
- at0040::Maturing [An oocyte that has progressed from prophase I but has not completed telophase I, thus does not exhibit the first polar body.]
- at0041::Mature [An oocyte at metaphase of meiosis II, exhibiting the first polar body and with the ability to become fertilized.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0035], code=at0035, itemType=ELEMENT, level=1, text=Embryo development stage, description=The stage of development of the embryo., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0051::Not specified [No information about the embryo development stage is provided or not applicable.]
- at0052::Cleavage stage [Embryo beginning at the two cell stage and up to, but not including, the morula stage.]
- at0053::Morula stage [Embryo after completion of compaction, typically 4 days after insemination or ICSI.]
- at0054::Blastocyst stage [Embryo at the blastocyst stage, containing a fluid filled central cavity, an outer layer of cells and an inner group of cells. Typically occurs at day 5–6 after insemination.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0042], code=at0042, itemType=ELEMENT, level=1, text=Embryo preservation day, description=The number of days following insemination on which the embryo was preserved (calendar days).
, comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0043::Not specified [No information about the embryo preservation day is provided or not applicable.]
- at0044::Day 1 [Embryo preserved on day 1 after insemination.]
- at0045::Day 2 [Embryo preserved on day 2 after insemination.]
- at0046::Day 3 [Embryo preserved on day 3 after insemination.]
- at0047::Day 4 [Embryo preserved on day 4 after insemination.]
- at0048::Day 5 [Embryo preserved on day 5 after insemination.]
- at0049::Day 6 [Embryo preserved on day 6 after insemination.]
- at0050::Day 7 [Embryo preserved on day 7 after insemination.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0036], code=at0036, itemType=ELEMENT, level=1, text=Type of preservation, description=The technique used to preserve the tissue or cells., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0055::Not specified [No coded information is provided about the type of preservation.]
- at0056::Vitrification [Product cryopreserved using a technique that leads to a glass-like solidification.]
- at0057::Slow active freezing [Product cryopreserved using a computerized controlled-rate freezer.]
- at0058::Slow passive freezing [Product cryopreserved without using a computerized controlled-rate freezer.]
- at0059::Not cryopreserved [Fresh or refrigerated product.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0037], code=at0037, itemType=ELEMENT, level=1, text=Sperm procurement method, description=The method used to procure sperm., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0060::Not specified [Collection or recovery method is not specified, or not applicable.]
- at0061::Ejaculated [Sperm procured from ejaculate.]
- at0062::Aspirated epididymal [Sperm procured by aspiration from epididymis.]
- at0063::Aspirated testicular [Sperm procured by percutaneous aspiration from testis.]
- at0064::Biopsy testicular [Sperm procured by biopsy of testis.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0065], code=at0065, itemType=ELEMENT, level=1, text=Sperm preparation, description=Information about the preparation of sperm., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0066::Not specified [No information about the preparation of sperm is provided, or not applicable.]
- at0067::Unwashed [Raw ejaculate.]
- at0068::Washed [he ejaculate has been washed by centrifugation in a buffer solution.]
- at0069::Prepared [Viable sperm cells have been isolated from other contents of the seminal fluid.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002], code=at0002, itemType=ELEMENT, level=1, text=Date of preservation, description=The date and/or time when the container and its' contents were preserved., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0006], code=at0006, itemType=ELEMENT, level=1, text=Preservation protocol ID, description=The identifier for the cryopreservation procedure., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0008], code=at0008, itemType=ELEMENT, level=1, text=Disposition date, description=The date and/or time when the container and its' contents were disposed of., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0009], code=at0009, itemType=ELEMENT, level=1, text=Disposition, description=The reason for disposing the contents of the container., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Text
Coded Text
- at0020::None [The contents of the container are not used.]
- at0021::Autologous treatment [The contents of the container are used for autologous treatment.]
- at0022::Donation to treatment [The contents of the container are donated to heterologous treatment.]
- at0023::Donation to research [The contents of the container are donated to research.]
- at0024::Transferred to other biobank [The container is transferred to an other biobank.]
- at0025::Discarded [The contents of the container are discarded.]
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0010], code=at0010, itemType=ELEMENT, level=1, text=Expiry date, description=The date beyond the contents are not to be used., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0012], code=at0012, itemType=ELEMENT, level=1, text=Comment, description=Additional narrative about the ART straw contents, not captured in other fields., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null]], credentials=[], state=[], activities=[], other_participations=[], context=[]}, topLevelItems={items=ResourceSimplifiedHierarchyItem [path=ROOT_/, code=at0000, itemType=CLUSTER, level=0, text=null, description=null, comment=null, uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=1..*, cardinalityText= (Cardinality: 1..*, unordered), subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=null, extendedValues=null]}, addHierarchyItemsTo=items, currentHierarchyItemsForAdding=[ResourceSimplifiedHierarchyItem [path=/items[at0001], code=at0001, itemType=ELEMENT, level=1, text=Product ID, description=The unique identifier for the reproductive cell or tissue product in the container., comment=This data element has multiple occurrences to allow for more than one oocyte or embryo, or other product per container. May be identical with applicable ID element in OBSERVATION.embryo_assessment or other related archetypes., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_IDENTIFIER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0026], code=at0026, itemType=ELEMENT, level=1, text=Product class, description=Class of cell or tissue product stored in the container., comment=Use of an established product classification is preferred, e.g. ISBT128 or EUTC., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0028::Sperm [The male gamete.]
- at0029::Testicular tissue [Fragment of testicular tissue.]
- at0030::Oocyte [The female gamete.]
- at0031::Ovarian tissue [Fragment of the ovary.]
- at0032::Zygote [A single cell resulting from fertilization of a mature oocyte by a spermatozoon and before completion of the first mitotic division.]
- at0033::Embryo [The biological organism resulting from the development of the zygote, until eight completed weeks after fertilization, equivalent to 10 weeks of gestational age.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0034], code=at0034, itemType=ELEMENT, level=1, text=Oocyte maturation stage, description=The stage of maturation of the oocyte., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0038::Not specified [No information about the oocyte maturation stage is provided or not applicable.]
- at0039::Immature [An oocyte at prophase of meiosis I (i.e. an oocyte at the germinal vesicle (GV) stage).]
- at0040::Maturing [An oocyte that has progressed from prophase I but has not completed telophase I, thus does not exhibit the first polar body.]
- at0041::Mature [An oocyte at metaphase of meiosis II, exhibiting the first polar body and with the ability to become fertilized.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0035], code=at0035, itemType=ELEMENT, level=1, text=Embryo development stage, description=The stage of development of the embryo., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0051::Not specified [No information about the embryo development stage is provided or not applicable.]
- at0052::Cleavage stage [Embryo beginning at the two cell stage and up to, but not including, the morula stage.]
- at0053::Morula stage [Embryo after completion of compaction, typically 4 days after insemination or ICSI.]
- at0054::Blastocyst stage [Embryo at the blastocyst stage, containing a fluid filled central cavity, an outer layer of cells and an inner group of cells. Typically occurs at day 5–6 after insemination.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0042], code=at0042, itemType=ELEMENT, level=1, text=Embryo preservation day, description=The number of days following insemination on which the embryo was preserved (calendar days).
, comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0043::Not specified [No information about the embryo preservation day is provided or not applicable.]
- at0044::Day 1 [Embryo preserved on day 1 after insemination.]
- at0045::Day 2 [Embryo preserved on day 2 after insemination.]
- at0046::Day 3 [Embryo preserved on day 3 after insemination.]
- at0047::Day 4 [Embryo preserved on day 4 after insemination.]
- at0048::Day 5 [Embryo preserved on day 5 after insemination.]
- at0049::Day 6 [Embryo preserved on day 6 after insemination.]
- at0050::Day 7 [Embryo preserved on day 7 after insemination.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0036], code=at0036, itemType=ELEMENT, level=1, text=Type of preservation, description=The technique used to preserve the tissue or cells., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0055::Not specified [No coded information is provided about the type of preservation.]
- at0056::Vitrification [Product cryopreserved using a technique that leads to a glass-like solidification.]
- at0057::Slow active freezing [Product cryopreserved using a computerized controlled-rate freezer.]
- at0058::Slow passive freezing [Product cryopreserved without using a computerized controlled-rate freezer.]
- at0059::Not cryopreserved [Fresh or refrigerated product.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0037], code=at0037, itemType=ELEMENT, level=1, text=Sperm procurement method, description=The method used to procure sperm., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0060::Not specified [Collection or recovery method is not specified, or not applicable.]
- at0061::Ejaculated [Sperm procured from ejaculate.]
- at0062::Aspirated epididymal [Sperm procured by aspiration from epididymis.]
- at0063::Aspirated testicular [Sperm procured by percutaneous aspiration from testis.]
- at0064::Biopsy testicular [Sperm procured by biopsy of testis.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0065], code=at0065, itemType=ELEMENT, level=1, text=Sperm preparation, description=Information about the preparation of sperm., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Coded Text
- at0066::Not specified [No information about the preparation of sperm is provided, or not applicable.]
- at0067::Unwashed [Raw ejaculate.]
- at0068::Washed [he ejaculate has been washed by centrifugation in a buffer solution.]
- at0069::Prepared [Viable sperm cells have been isolated from other contents of the seminal fluid.]
Text
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002], code=at0002, itemType=ELEMENT, level=1, text=Date of preservation, description=The date and/or time when the container and its' contents were preserved., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0006], code=at0006, itemType=ELEMENT, level=1, text=Preservation protocol ID, description=The identifier for the cryopreservation procedure., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0008], code=at0008, itemType=ELEMENT, level=1, text=Disposition date, description=The date and/or time when the container and its' contents were disposed of., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0009], code=at0009, itemType=ELEMENT, level=1, text=Disposition, description=The reason for disposing the contents of the container., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
Text
Coded Text
- at0020::None [The contents of the container are not used.]
- at0021::Autologous treatment [The contents of the container are used for autologous treatment.]
- at0022::Donation to treatment [The contents of the container are donated to heterologous treatment.]
- at0023::Donation to research [The contents of the container are donated to research.]
- at0024::Transferred to other biobank [The container is transferred to an other biobank.]
- at0025::Discarded [The contents of the container are discarded.]
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0010], code=at0010, itemType=ELEMENT, level=1, text=Expiry date, description=The date beyond the contents are not to be used., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0012], code=at0012, itemType=ELEMENT, level=1, text=Comment, description=Additional narrative about the ART straw contents, not captured in other fields., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null]], minIndents={}, termBindingRetrievalErrorMessage=null] |