ARCHETYPE ART container details (openEHR-EHR-CLUSTER.art_container_details.v0)

Name: ART container details
License: http://creativecommons.org/licenses/by-sa/4.0/

ARCHETYPE ID	openEHR-EHR-CLUSTER.art_container_details.v0
Concept	ART container details
Description	Details about the contents of a container stored for the purposes of assisted reproduction treatment.
Use	Use to record specific details about the cells or tissue products stored in a container for the purposes of assisted reproduction treatment. The container may contain sperm, testicular tissue, ovarian tissue, or one or more oocyte or embryos.
Purpose	To record specific details about the contents of a container stored for the purposes of assisted reproduction treatment.
References	Ashford, P., et al., Standard terminology for reproductive tissue and cell products for use in ART. Human Reproduction Open, 2019. 2019(2): p. hoz005.
Copyright	© openEHR Foundation
Authors	Author name: Heather Leslie Organisation: Atomica Informatics Email: heather.leslie@atomicainformatics.com Date originally authored: 2021-11-30
Other Details Language	Author name: Heather Leslie Organisation: Atomica Informatics Email: heather.leslie@atomicainformatics.com Date originally authored: 2021-11-30
OtherDetails Language Independent	{licence=This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/4.0/., custodian_organisation=openEHR Foundation, references=Ashford, P., et al., Standard terminology for reproductive tissue and cell products for use in ART. Human Reproduction Open, 2019. 2019(2): p. hoz005., original_namespace=org.openehr, original_publisher=openEHR Foundation, custodian_namespace=org.openehr, MD5-CAM-1.0.1=8BCF2217BA076EF7A61AAB60A41F5502, build_uid=fddd7540-e9c9-42f0-b387-75039709781f, revision=0.0.1-alpha}
Keywords	container, assister reproduction, sperm, testicular, ovarian, tissue, oocyte, zygote, embryo, blastocyst
Lifecycle	in_development
UID	a6e5f197-a2b0-486f-8477-3913fd8ecbb8
Language used	en
Citeable Identifier	1013.1.5884
Revision Number	0.0.1-alpha
All	Archetype [runtimeNameConstraintForConceptName=null, archetypeConceptBinding=null, archetypeConceptDescription=Details about the contents of a container stored for the purposes of assisted reproduction treatment., archetypeConceptComment=null, otherContributors=Vebjørn Arntzen, Oslo University Hospital Liv Laugen, Oslo University Hospital Peter Fedorcsak, Oslo University Hospital, originalLanguage=en, translators=, subjectOfData=unconstrained, archetypeTranslationTree=null, topLevelToAshis={items=[ResourceSimplifiedHierarchyItem [path=/items[at0001], code=at0001, itemType=ELEMENT, level=1, text=Product ID, description=The unique identifier for the reproductive cell or tissue product in the container., comment=This data element has multiple occurrences to allow for more than one oocyte or embryo, or other product per container. May be identical with applicable ID element in OBSERVATION.embryo_assessment or other related archetypes., uncommonOntologyItems=null, occurencesFormal=0.., occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_IDENTIFIER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0026], code=at0026, itemType=ELEMENT, level=1, text=Product class, description=Class of cell or tissue product stored in the container., comment=Use of an established product classification is preferred, e.g. ISBT128 or EUTC., uncommonOntologyItems=null, occurencesFormal=0.., occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0028::Sperm [The male gamete.] at0029::Testicular tissue [Fragment of testicular tissue.] at0030::Oocyte [The female gamete.] at0031::Ovarian tissue [Fragment of the ovary.] at0032::Zygote [A single cell resulting from fertilization of a mature oocyte by a spermatozoon and before completion of the first mitotic division.] at0033::Embryo [The biological organism resulting from the development of the zygote, until eight completed weeks after fertilization, equivalent to 10 weeks of gestational age.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0034], code=at0034, itemType=ELEMENT, level=1, text=Oocyte maturation stage, description=The stage of maturation of the oocyte., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0038::Not specified [No information about the oocyte maturation stage is provided or not applicable.] at0039::Immature [An oocyte at prophase of meiosis I (i.e. an oocyte at the germinal vesicle (GV) stage).] at0040::Maturing [An oocyte that has progressed from prophase I but has not completed telophase I, thus does not exhibit the first polar body.] at0041::Mature [An oocyte at metaphase of meiosis II, exhibiting the first polar body and with the ability to become fertilized.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0035], code=at0035, itemType=ELEMENT, level=1, text=Embryo development stage, description=The stage of development of the embryo., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0051::Not specified [No information about the embryo development stage is provided or not applicable.] at0052::Cleavage stage [Embryo beginning at the two cell stage and up to, but not including, the morula stage.] at0053::Morula stage [Embryo after completion of compaction, typically 4 days after insemination or ICSI.] at0054::Blastocyst stage [Embryo at the blastocyst stage, containing a fluid filled central cavity, an outer layer of cells and an inner group of cells. Typically occurs at day 5–6 after insemination.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0042], code=at0042, itemType=ELEMENT, level=1, text=Embryo preservation day, description=The number of days following insemination on which the embryo was preserved (calendar days). , comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0043::Not specified [No information about the embryo preservation day is provided or not applicable.] at0044::Day 1 [Embryo preserved on day 1 after insemination.] at0045::Day 2 [Embryo preserved on day 2 after insemination.] at0046::Day 3 [Embryo preserved on day 3 after insemination.] at0047::Day 4 [Embryo preserved on day 4 after insemination.] at0048::Day 5 [Embryo preserved on day 5 after insemination.] at0049::Day 6 [Embryo preserved on day 6 after insemination.] at0050::Day 7 [Embryo preserved on day 7 after insemination.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0036], code=at0036, itemType=ELEMENT, level=1, text=Type of preservation, description=The technique used to preserve the tissue or cells., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0055::Not specified [No coded information is provided about the type of preservation.] at0056::Vitrification [Product cryopreserved using a technique that leads to a glass-like solidification.] at0057::Slow active freezing [Product cryopreserved using a computerized controlled-rate freezer.] at0058::Slow passive freezing [Product cryopreserved without using a computerized controlled-rate freezer.] at0059::Not cryopreserved [Fresh or refrigerated product.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0037], code=at0037, itemType=ELEMENT, level=1, text=Sperm procurement method, description=The method used to procure sperm., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0060::Not specified [Collection or recovery method is not specified, or not applicable.] at0061::Ejaculated [Sperm procured from ejaculate.] at0062::Aspirated epididymal [Sperm procured by aspiration from epididymis.] at0063::Aspirated testicular [Sperm procured by percutaneous aspiration from testis.] at0064::Biopsy testicular [Sperm procured by biopsy of testis.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0065], code=at0065, itemType=ELEMENT, level=1, text=Sperm preparation, description=Information about the preparation of sperm., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0066::Not specified [No information about the preparation of sperm is provided, or not applicable.] at0067::Unwashed [Raw ejaculate.] at0068::Washed [he ejaculate has been washed by centrifugation in a buffer solution.] at0069::Prepared [Viable sperm cells have been isolated from other contents of the seminal fluid.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002], code=at0002, itemType=ELEMENT, level=1, text=Date of preservation, description=The date and/or time when the container and its' contents were preserved., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0006], code=at0006, itemType=ELEMENT, level=1, text=Preservation protocol ID, description=The identifier for the cryopreservation procedure., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0008], code=at0008, itemType=ELEMENT, level=1, text=Disposition date, description=The date and/or time when the container and its' contents were disposed of., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0009], code=at0009, itemType=ELEMENT, level=1, text=Disposition, description=The reason for disposing the contents of the container., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Text Coded Text at0020::None [The contents of the container are not used.] at0021::Autologous treatment [The contents of the container are used for autologous treatment.] at0022::Donation to treatment [The contents of the container are donated to heterologous treatment.] at0023::Donation to research [The contents of the container are donated to research.] at0024::Transferred to other biobank [The container is transferred to an other biobank.] at0025::Discarded [The contents of the container are discarded.] , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0010], code=at0010, itemType=ELEMENT, level=1, text=Expiry date, description=The date beyond the contents are not to be used., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0012], code=at0012, itemType=ELEMENT, level=1, text=Comment, description=Additional narrative about the ART straw contents, not captured in other fields., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null]], description=[], context=[], activities=[], identities=[], capabilities=[], provider=[], protocol=[], content=[], source=[], credentials=[], events=[], data=[], contacts=[], ism_transition=[], details=[], relationships=[], state=[], target=[], other_participations=[]}, topLevelItems={items=ResourceSimplifiedHierarchyItem [path=ROOT_/, code=at0000, itemType=CLUSTER, level=0, text=null, description=null, comment=null, uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=1.., cardinalityText= (Cardinality: 1.., unordered), subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=null, extendedValues=null]}, addHierarchyItemsTo=items, currentHierarchyItemsForAdding=[ResourceSimplifiedHierarchyItem [path=/items[at0001], code=at0001, itemType=ELEMENT, level=1, text=Product ID, description=The unique identifier for the reproductive cell or tissue product in the container., comment=This data element has multiple occurrences to allow for more than one oocyte or embryo, or other product per container. May be identical with applicable ID element in OBSERVATION.embryo_assessment or other related archetypes., uncommonOntologyItems=null, occurencesFormal=0.., occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_IDENTIFIER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0026], code=at0026, itemType=ELEMENT, level=1, text=Product class, description=Class of cell or tissue product stored in the container., comment=Use of an established product classification is preferred, e.g. ISBT128 or EUTC., uncommonOntologyItems=null, occurencesFormal=0.., occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0028::Sperm [The male gamete.] at0029::Testicular tissue [Fragment of testicular tissue.] at0030::Oocyte [The female gamete.] at0031::Ovarian tissue [Fragment of the ovary.] at0032::Zygote [A single cell resulting from fertilization of a mature oocyte by a spermatozoon and before completion of the first mitotic division.] at0033::Embryo [The biological organism resulting from the development of the zygote, until eight completed weeks after fertilization, equivalent to 10 weeks of gestational age.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0034], code=at0034, itemType=ELEMENT, level=1, text=Oocyte maturation stage, description=The stage of maturation of the oocyte., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0038::Not specified [No information about the oocyte maturation stage is provided or not applicable.] at0039::Immature [An oocyte at prophase of meiosis I (i.e. an oocyte at the germinal vesicle (GV) stage).] at0040::Maturing [An oocyte that has progressed from prophase I but has not completed telophase I, thus does not exhibit the first polar body.] at0041::Mature [An oocyte at metaphase of meiosis II, exhibiting the first polar body and with the ability to become fertilized.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0035], code=at0035, itemType=ELEMENT, level=1, text=Embryo development stage, description=The stage of development of the embryo., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0051::Not specified [No information about the embryo development stage is provided or not applicable.] at0052::Cleavage stage [Embryo beginning at the two cell stage and up to, but not including, the morula stage.] at0053::Morula stage [Embryo after completion of compaction, typically 4 days after insemination or ICSI.] at0054::Blastocyst stage [Embryo at the blastocyst stage, containing a fluid filled central cavity, an outer layer of cells and an inner group of cells. Typically occurs at day 5–6 after insemination.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0042], code=at0042, itemType=ELEMENT, level=1, text=Embryo preservation day, description=The number of days following insemination on which the embryo was preserved (calendar days). , comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0043::Not specified [No information about the embryo preservation day is provided or not applicable.] at0044::Day 1 [Embryo preserved on day 1 after insemination.] at0045::Day 2 [Embryo preserved on day 2 after insemination.] at0046::Day 3 [Embryo preserved on day 3 after insemination.] at0047::Day 4 [Embryo preserved on day 4 after insemination.] at0048::Day 5 [Embryo preserved on day 5 after insemination.] at0049::Day 6 [Embryo preserved on day 6 after insemination.] at0050::Day 7 [Embryo preserved on day 7 after insemination.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0036], code=at0036, itemType=ELEMENT, level=1, text=Type of preservation, description=The technique used to preserve the tissue or cells., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0055::Not specified [No coded information is provided about the type of preservation.] at0056::Vitrification [Product cryopreserved using a technique that leads to a glass-like solidification.] at0057::Slow active freezing [Product cryopreserved using a computerized controlled-rate freezer.] at0058::Slow passive freezing [Product cryopreserved without using a computerized controlled-rate freezer.] at0059::Not cryopreserved [Fresh or refrigerated product.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0037], code=at0037, itemType=ELEMENT, level=1, text=Sperm procurement method, description=The method used to procure sperm., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0060::Not specified [Collection or recovery method is not specified, or not applicable.] at0061::Ejaculated [Sperm procured from ejaculate.] at0062::Aspirated epididymal [Sperm procured by aspiration from epididymis.] at0063::Aspirated testicular [Sperm procured by percutaneous aspiration from testis.] at0064::Biopsy testicular [Sperm procured by biopsy of testis.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0065], code=at0065, itemType=ELEMENT, level=1, text=Sperm preparation, description=Information about the preparation of sperm., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Coded Text at0066::Not specified [No information about the preparation of sperm is provided, or not applicable.] at0067::Unwashed [Raw ejaculate.] at0068::Washed [he ejaculate has been washed by centrifugation in a buffer solution.] at0069::Prepared [Viable sperm cells have been isolated from other contents of the seminal fluid.] Text , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0002], code=at0002, itemType=ELEMENT, level=1, text=Date of preservation, description=The date and/or time when the container and its' contents were preserved., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0006], code=at0006, itemType=ELEMENT, level=1, text=Preservation protocol ID, description=The identifier for the cryopreservation procedure., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0008], code=at0008, itemType=ELEMENT, level=1, text=Disposition date, description=The date and/or time when the container and its' contents were disposed of., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0009], code=at0009, itemType=ELEMENT, level=1, text=Disposition, description=The reason for disposing the contents of the container., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of: Text Coded Text at0020::None [The contents of the container are not used.] at0021::Autologous treatment [The contents of the container are used for autologous treatment.] at0022::Donation to treatment [The contents of the container are donated to heterologous treatment.] at0023::Donation to research [The contents of the container are donated to research.] at0024::Transferred to other biobank [The container is transferred to an other biobank.] at0025::Discarded [The contents of the container are discarded.] , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0010], code=at0010, itemType=ELEMENT, level=1, text=Expiry date, description=The date beyond the contents are not to be used., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0012], code=at0012, itemType=ELEMENT, level=1, text=Comment, description=Additional narrative about the ART straw contents, not captured in other fields., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null]], minIndents={}, termBindingRetrievalErrorMessage=null]