ARCHETYPE Phenopacket HtsFile (openEHR-EHR-CLUSTER.pp_htsfile.v0)

ARCHETYPE IDopenEHR-EHR-CLUSTER.pp_htsfile.v0
ConceptPhenopacket HtsFile
DescriptionPhenopacket HtsFile
Purpose
References
Copyright© openEHR Foundation
AuthorsAuthor name: Heather Leslie
Organisation: Atomica Informatics
Email: heather.leslie@atomicainformatics.com
Date originally authored: 2019-09-25
Other Details LanguageAuthor name: Heather Leslie
Organisation: Atomica Informatics
Email: heather.leslie@atomicainformatics.com
Date originally authored: 2019-09-25
Other Details (Language Independent)
  • Licence: This work is licensed under the Creative Commons Attribution-ShareAlike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/.
  • Custodian Organisation: openEHR Foundation
  • Original Namespace: org.openehr
  • Original Publisher: openEHR Foundation
  • Custodian Namespace: org.openehr
  • MD5-CAM-1.0.1: BBA0FCB5CC8A2003B542B2399D7539AE
  • Build Uid: c66eebab-f654-4fc4-acc0-e84f57b3f226
  • Revision: 0.0.1-alpha
Keywords
Lifecyclein_development
UID13286611-babd-4403-b5a9-c608b8220dd6
Language useden
Citeable Identifier1013.1.4147
Revision Number0.0.1-alpha
items
uriuri: A valid URI.
For example: "file://data/genomes/germline_wgs.vcf.gz".
descriptiondescription: Arbitrary description of the file
For example; "Matched normal germline sample".
hts_formathts_format: *
For example: "VCF".
  • UNKNOWN [An HTS file of unknown type.]
  • SAM [A SAM format file.]
  • BAM [A BAM format file.]
  • CRAM [A CRAM format file.]
  • VCF [A VCF format file.]
  • BCF [A BCF format file.]
  • GVCF [A GVCF format file.]
genome_assemblygenome_assembly: *
For example: "GRCh38".
individual_identifierindividual_identifier: The Individual.id component required for mapping between the Individual.id or Biosample.id to the sample identifier in the HTS file.
For example: "patient23456".
sample_identifiersample_identifier: The Biosample.id component required for mapping between the Individual.id or Biosample.id to the sample identifier in the HTS file.
For example: "NA12345".
Other contributors
Translators