ARCHETYPE Specimen preparation (openEHR-EHR-CLUSTER.specimen_preparation.v0)

ARCHETYPE IDopenEHR-EHR-CLUSTER.specimen_preparation.v0
ConceptSpecimen preparation
DescriptionTo record details of laboratory specimen processing.
UseGenerally used within a CLUSTER.specimen archetype. In general laboratory specimen processing are handled internally by a Laboratory Information system (LIS) and are not reported back to the requesting clinician or persisted in the patient record. However there are some circumstances, particularly in histopathology, where such details are regarded as being critical to interpretation of the results and are carried into the patient record.
PurposeTo record details of laboratory specimen processing.
ReferencesDigital Imaging and Communications in Medicine (DICOM) Supplement 122: Specimen Module and Revised Pathology SOP Classes
DICOM Standards Committee, Working Groups 26, Pathology

IHE Anatomic Pathology Technical Framework Volume 1 (PAT TF-1) Revision 1.2 – Trial Implementation
November 24, 2008
Copyright© openEHR Foundation
AuthorsAuthor name: Dr Ian McNicoll
Organisation: Ocean Informatics
Email: ian.mcnicoll@oceaninformatics.com
Date originally authored: 2009-01-27
Other Details LanguageAuthor name: Dr Ian McNicoll
Organisation: Ocean Informatics
Email: ian.mcnicoll@oceaninformatics.com
Date originally authored: 2009-01-27
OtherDetails Language Independent{licence=This work is licensed under the Creative Commons Attribution-ShareAlike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/., custodian_organisation=openEHR Foundation, references=Digital Imaging and Communications in Medicine (DICOM) Supplement 122: Specimen Module and Revised Pathology SOP Classes DICOM Standards Committee, Working Groups 26, Pathology IHE Anatomic Pathology Technical Framework Volume 1 (PAT TF-1) Revision 1.2 – Trial Implementation November 24, 2008, original_namespace=org.openehr, original_publisher=openEHR Foundation, custodian_namespace=org.openehr, MD5-CAM-1.0.1=2DAB139AF0B9CFFD3030203FAF6B3701, build_uid=67446c83-0bea-4625-af56-1a1627477510, revision=0.0.1-alpha}
Keywordsspecimen, laboratory, sample, histopathology, histology, pathology
Lifecyclein_development
UIDdbb8a3c4-4235-41e6-91a0-4e27a7c32262
Language useden
Citeable Identifier1013.1.358
Revision Number0.0.1-alpha
AllArchetype [runtimeNameConstraintForConceptName=null, archetypeConceptBinding=null, archetypeConceptDescription=To record details of laboratory specimen processing., archetypeConceptComment=null, otherContributors=Sam Heard Ocean Informatics
Heather Leslie Ocean Informatics
Koray Atalag University of Auckland, originalLanguage=en, translators=, subjectOfData=unconstrained, archetypeTranslationTree=null, topLevelToAshis={details=[], identities=[], source=[], credentials=[], context=[], description=[], ism_transition=[], events=[], content=[], items=[ResourceSimplifiedHierarchyItem [path=/items[at0072], code=at0072, itemType=ELEMENT, level=1, text=Datetime of processing step, description=The data and time that the processing step occured., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0071], code=at0071, itemType=ELEMENT, level=1, text=Processing step type, description=A DICOM compatible code describing a single processing step., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=
  • Specimen collection [The specimen has been collected.]
  • Specimen receiving [The specimen has been received.]
  • Sampling of tissue specimen [The specimen has been sampled.]
  • Staining [The specimen has been stained.]
  • Specimen processing [The specimen has been processed.]
  • Specimen storage [The specimen has been stored.]
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0074], code=at0074, itemType=ELEMENT, level=1, text=Specimen processing type, description=A physical process applied to the specimen e.g. block embedding., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0087], code=at0087, itemType=ELEMENT, level=1, text=Description, description=A general description of the specimen prepartion., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0088], code=at0088, itemType=SLOT, level=1, text=Device details, description=Details of the device used in specimen preparation., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=Include:
All not explicitly excluded archetypes, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086], code=at0086, itemType=CLUSTER, level=1, text=Specific preparation, description=Details of the specific preparation carried out during a single processing step., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=1..1, cardinalityText=Maximum of 1 item, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0073], code=at0073, itemType=ELEMENT, level=2, text=Sampling method, description=The sampling method used. e.g dissection, block sampling., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0084], code=at0084, itemType=ELEMENT, level=2, text=Staining method, description=Stain used for a microscopy slide., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0075], code=at0075, itemType=ELEMENT, level=2, text=Embedding medium, description=The medium within which the specimen is embedded e.g paraffin., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0076], code=at0076, itemType=ELEMENT, level=2, text=Fixative, description=The fixative used., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null]], capabilities=[], other_participations=[], contacts=[], target=[], data=[], relationships=[], state=[], protocol=[], activities=[], provider=[]}, topLevelItems={items=ResourceSimplifiedHierarchyItem [path=ROOT_/, code=at0000, itemType=CLUSTER, level=0, text=null, description=null, comment=null, uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=1..*, cardinalityText=, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=null, extendedValues=null]}, addHierarchyItemsTo=items, currentHierarchyItemsForAdding=[ResourceSimplifiedHierarchyItem [path=/items[at0072], code=at0072, itemType=ELEMENT, level=1, text=Datetime of processing step, description=The data and time that the processing step occured., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0071], code=at0071, itemType=ELEMENT, level=1, text=Processing step type, description=A DICOM compatible code describing a single processing step., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=
  • Specimen collection [The specimen has been collected.]
  • Specimen receiving [The specimen has been received.]
  • Sampling of tissue specimen [The specimen has been sampled.]
  • Staining [The specimen has been stained.]
  • Specimen processing [The specimen has been processed.]
  • Specimen storage [The specimen has been stored.]
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0074], code=at0074, itemType=ELEMENT, level=1, text=Specimen processing type, description=A physical process applied to the specimen e.g. block embedding., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0087], code=at0087, itemType=ELEMENT, level=1, text=Description, description=A general description of the specimen prepartion., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0088], code=at0088, itemType=SLOT, level=1, text=Device details, description=Details of the device used in specimen preparation., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=Include:
All not explicitly excluded archetypes, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086], code=at0086, itemType=CLUSTER, level=1, text=Specific preparation, description=Details of the specific preparation carried out during a single processing step., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=1..1, cardinalityText=Maximum of 1 item, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0073], code=at0073, itemType=ELEMENT, level=2, text=Sampling method, description=The sampling method used. e.g dissection, block sampling., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0084], code=at0084, itemType=ELEMENT, level=2, text=Staining method, description=Stain used for a microscopy slide., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0075], code=at0075, itemType=ELEMENT, level=2, text=Embedding medium, description=The medium within which the specimen is embedded e.g paraffin., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0076], code=at0076, itemType=ELEMENT, level=2, text=Fixative, description=The fixative used., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null]], minIndents={}, termBindingRetrievalErrorMessage=null]